27. Import File Formats Testing

To test in: Insight

Purpose of the test is to check the import of various file formats and ability to report failures correctly.

  1. Note any special cases for the file format. These will be in the Notes column in the spreadsheet - see [here], or for special cases in a README which you must read first.

  2. Import the files for this format. A known good selection is located in /ome/data_repo/test_images_good or a larger set in /ome/data_repo/curated (see details [here])

    • Note that some formats have special import requirements–please check first!

    • Check for any import failures, and take a copy of any exceptions (= import failure reasons in the “Failed” button window) or other failures [ImportFileFT002:, ImportFileFT003, ImportFileFT004].

    • Check that all files have been copied in any case, including import failure case.

    • Check each imported image visually for the following features:
      • All images have thumbnails [ImportFileFT005]. Note that big images may take some time to generate thumbnails following import, showing clock placeholder [ImportFileFT005b].

      • All image planes are visible, and that the correct number of planes are in each dimension (check the metadata pane) [ImportFileFT006:] and are of the correct size.

      • All ROIs (if any) are present and in the correct place [ImportFileFT007:].

../_images/00214.png

ImportFileFT002:





























../_images/0037.png

ImportFileFT003





























../_images/0047.png

ImportFileFT004





























../_images/00512.png

ImportFileFT005

























../_images/005b.png

ImportFileFT005b




















../_images/0064.png

ImportFileFT006:





























../_images/0073.png

ImportFileFT007: